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 Display  Show 
All: 56 
Review: 6 
Items 1 - 56 of 56
 One page.
1: Mears JA, Sharma MR, Gutell RR, McCook AS, Richardson PE, Caulfield TR, Agrawal RK, Harvey SC. Related Articles, Links
Abstract A structural model for the large subunit of the Mammalian mitochondrial ribosome.
J Mol Biol. 2006 Apr 21;358(1):193-212. Epub 2006 Feb 10.
PMID: 16510155 [PubMed - in process]
2: Stagg SM, Harvey SC. Related Articles, Links
Abstract Exploring the flexibility of ribosome recycling factor using molecular dynamics.
Biophys J. 2005 Oct;89(4):2659-66. Epub 2005 Jul 29.
PMID: 16055531 [PubMed - indexed for MEDLINE]
3: Richardson PE, Manchekar M, Dashti N, Jones MK, Beigneux A, Young SG, Harvey SC, Segrest JP. Related Articles, Links
Abstract Assembly of lipoprotein particles containing apolipoprotein-B: structural model for the nascent lipoprotein particle.
Biophys J. 2005 Apr;88(4):2789-800. Epub 2005 Jan 14.
PMID: 15653747 [PubMed - indexed for MEDLINE]
4: Li L, Chen J, Mishra VK, Kurtz JA, Cao D, Klon AE, Harvey SC, Anantharamaiah GM, Segrest JP. Related Articles, Links
Abstract Double belt structure of discoidal high density lipoproteins: molecular basis for size heterogeneity.
J Mol Biol. 2004 Nov 5;343(5):1293-311.
PMID: 15491614 [PubMed - indexed for MEDLINE]
5: LaMarque JC, Le TV, Harvey SC. Related Articles, Links
Abstract Packaging double-helical DNA into viral capsids.
Biopolymers. 2004 Feb 15;73(3):348-55.
PMID: 14755571 [PubMed - indexed for MEDLINE]
6: Dupuy LC, Kelly NJ, Elgavish TE, Harvey SC, Morrow CD. Related Articles, Links
Free in PMC Probing the importance of tRNA anticodon: human immunodeficiency virus type 1 (HIV-1) RNA genome complementarity with an HIV-1 that selects tRNA(Glu) for replication.
J Virol. 2003 Aug;77(16):8756-64.
PMID: 12885895 [PubMed - indexed for MEDLINE]
7: Stagg SM, Mears JA, Harvey SC. Related Articles, Links
Abstract A structural model for the assembly of the 30S subunit of the ribosome.
J Mol Biol. 2003 Apr 18;328(1):49-61.
PMID: 12683996 [PubMed - indexed for MEDLINE]
8: Sheldahl C, Xing J, Dong WJ, Harvey SC, Cheung HC. Related Articles, Links
Free in PMC The calcium-saturated cTnI/cTnC complex: structure of the inhibitory region of cTnI.
Biophys J. 2003 Feb;84(2 Pt 1):1057-64.
PMID: 12547787 [PubMed - indexed for MEDLINE]
9: Harvey SC, Wang C, Teletchea S, Lavery R. Related Articles, Links
Abstract Motifs in nucleic acids: molecular mechanics restraints for base pairing and base stacking.
J Comput Chem. 2003 Jan 15;24(1):1-9.
PMID: 12483670 [PubMed - indexed for MEDLINE]
10: Klon AE, Segrest JP, Harvey SC. Related Articles, Links
Abstract Molecular dynamics simulations on discoidal HDL particles suggest a mechanism for rotation in the apo A-I belt model.
J Mol Biol. 2002 Dec 6;324(4):703-21.
PMID: 12460572 [PubMed - indexed for MEDLINE]
11: Klon AE, Segrest JP, Harvey SC. Related Articles, Links
Abstract Comparative models for human apolipoprotein A-I bound to lipid in discoidal high-density lipoprotein particles.
Biochemistry. 2002 Sep 10;41(36):10895-905. Review.
PMID: 12206659 [PubMed - indexed for MEDLINE]
12: Mears JA, Cannone JJ, Stagg SM, Gutell RR, Agrawal RK, Harvey SC. Related Articles, Links
Abstract Modeling a minimal ribosome based on comparative sequence analysis.
J Mol Biol. 2002 Aug 9;321(2):215-34.
PMID: 12144780 [PubMed - indexed for MEDLINE]
13: Elgavish T, Cannone JJ, Lee JC, Harvey SC, Gutell RR. Related Articles, Links
Abstract AA.AG@helix.ends: A:A and A:G base-pairs at the ends of 16 S and 23 S rRNA helices.
J Mol Biol. 2001 Jul 20;310(4):735-53.
PMID: 11453684 [PubMed - indexed for MEDLINE]
14: Stagg SM, Frazer-Abel AA, Hagerman PJ, Harvey SC. Related Articles, Links
Abstract Structural studies of the tRNA domain of tmRNA.
J Mol Biol. 2001 Jun 8;309(3):727-35.
PMID: 11397092 [PubMed - indexed for MEDLINE]
15: VanLoock MS, Agrawal RK, Gabashvili IS, Qi L, Frank J, Harvey SC. Related Articles, Links
Abstract Movement of the decoding region of the 16 S ribosomal RNA accompanies tRNA translocation.
J Mol Biol. 2000 Dec 8;304(4):507-15.
PMID: 11099376 [PubMed - indexed for MEDLINE]
16: Klon AE, Jones MK, Segrest JP, Harvey SC. Related Articles, Links
Free in PMC Molecular belt models for the apolipoprotein A-I Paris and Milano mutations.
Biophys J. 2000 Sep;79(3):1679-85.
PMID: 10969027 [PubMed - indexed for MEDLINE]
17: Segrest JP, Harvey SC, Zannis V. Related Articles, Links
Abstract Detailed molecular model of apolipoprotein A-I on the surface of high-density lipoproteins and its functional implications.
Trends Cardiovasc Med. 2000 Aug;10(6):246-52. Review.
PMID: 11282302 [PubMed - indexed for MEDLINE]
18: Segrest JP, Li L, Anantharamaiah GM, Harvey SC, Liadaki KN, Zannis V. Related Articles, Links
Abstract Structure and function of apolipoprotein A-I and high-density lipoprotein.
Curr Opin Lipidol. 2000 Apr;11(2):105-15. Review.
PMID: 10787171 [PubMed - indexed for MEDLINE]
19: Segrest JP, Jones MK, Klon AE, Sheldahl CJ, Hellinger M, De Loof H, Harvey SC. Related Articles, Links
Free Full Text A detailed molecular belt model for apolipoprotein A-I in discoidal high density lipoprotein.
J Biol Chem. 1999 Nov 5;274(45):31755-8.
PMID: 10542194 [PubMed - indexed for MEDLINE]
20: Sheldahl C, Harvey SC. Related Articles, Links
Free in PMC Molecular dynamics on a model for nascent high-density lipoprotein: role of salt bridges.
Biophys J. 1999 Mar;76(3):1190-8.
PMID: 10049304 [PubMed - indexed for MEDLINE]
21: VanLoock MS, Easterwood TR, Harvey SC. Related Articles, Links
Abstract Major groove binding of the tRNA/mRNA complex to the 16 S ribosomal RNA decoding site.
J Mol Biol. 1999 Feb 5;285(5):2069-78.
PMID: 9925785 [PubMed - indexed for MEDLINE]
22: Elgavish T, VanLoock MS, Harvey SC. Related Articles, Links
Abstract Exploring three-dimensional structures of the HIV-1 RNA/tRNALys3 initiation complex.
J Mol Biol. 1999 Jan 15;285(2):449-53.
PMID: 9878419 [PubMed - indexed for MEDLINE]
23: VanLoock MS, Harris BA, Harvey SC. Related Articles, Links
Abstract To knot or not to knot? Examination of 16S ribosomal RNA models.
J Biomol Struct Dyn. 1998 Dec;16(3):709-13.
PMID: 10052626 [PubMed - indexed for MEDLINE]
24: Easterwood TR, Harvey SC. Related Articles, Links
Free in PMC Ribonuclease P RNA: models of the 15/16 bulge from Escherichia coli and the P15 stem loop of Bacillus subtilis.
RNA. 1997 Jun;3(6):577-85.
PMID: 9174093 [PubMed - indexed for MEDLINE]
25: Harvey SC. Related Articles, Links
Abstract Slipped structures in DNA triplet repeat sequences: entropic contributions to genetic instabilities.
Biochemistry. 1997 Mar 18;36(11):3047-9.
PMID: 9115978 [PubMed - indexed for MEDLINE]
26: VanLoock MS, Easterwood TR, Harvey SC. Related Articles, Links
No abstract tRNA/mRNA/rRNA interactions in the Escherichia coli ribosomal decoding site with and without bound aminoglycoside.
Nucleic Acids Symp Ser. 1997;(36):68. No abstract available.
PMID: 9478209 [PubMed - indexed for MEDLINE]
27: Tan RK, Sprous D, Harvey SC. Related Articles, Links
Abstract Molecular dynamics simulations of small DNA plasmids: effects of sequence and supercoiling on intramolecular motions.
Biopolymers. 1996 Aug;39(2):259-78.
PMID: 8679953 [PubMed - indexed for MEDLINE]
28: Sprous D, Tan RK, Harvey SC. Related Articles, Links
Abstract Molecular modeling of closed circular DNA thermodynamic ensembles.
Biopolymers. 1996 Aug;39(2):243-58.
PMID: 8679952 [PubMed - indexed for MEDLINE]
29: Sprous D, Harvey SC. Related Articles, Links
Free in PMC Action at a distance in supercoiled DNA: effects of sequence on slither, branching, and intramolecular concentration.
Biophys J. 1996 Apr;70(4):1893-908.
PMID: 8785349 [PubMed - indexed for MEDLINE]
30: Tan RK, Harvey SC, Di Mauro E, Camilloni G, Venditti P. Related Articles, Links
Abstract DNA topological context affects access to eukaryotic DNA topoisomerase I.
J Biomol Struct Dyn. 1996 Apr;13(5):855-72.
PMID: 8723779 [PubMed - indexed for MEDLINE]
31: Easterwood TR, Harvey SC. Related Articles, Links
Abstract Modeling the structure of the ribosome.
Biochem Cell Biol. 1995 Nov-Dec;73(11-12):751-6. Review.
PMID: 8721991 [PubMed - indexed for MEDLINE]
32: Harvey SC, Dlakic M, Griffith J, Harrington R, Park K, Sprous D, Zacharias W. Related Articles, Links
Abstract What is the basis of sequence-directed curvature in DNAs containing A tracts?
J Biomol Struct Dyn. 1995 Oct;13(2):301-7. Review.
PMID: 8579789 [PubMed - indexed for MEDLINE]
33: Sprous D, Zacharias W, Wood ZA, Harvey SC. Related Articles, Links
Free in PMC Dehydrating agents sharply reduce curvature in DNAs containing A tracts.
Nucleic Acids Res. 1995 May 25;23(10):1816-21.
PMID: 7784188 [PubMed - indexed for MEDLINE]
34: Hao MH, Harvey SC. Related Articles, Links
Abstract Active transport of ions across membranes: energetic role of electrostatics and binding site asymmetry.
Biochim Biophys Acta. 1995 Mar 8;1234(1):5-14.
PMID: 7880859 [PubMed - indexed for MEDLINE]
35: Easterwood TR, Major F, Malhotra A, Harvey SC. Related Articles, Links
Free in PMC Orientations of transfer RNA in the ribosomal A and P sites.
Nucleic Acids Res. 1994 Sep 11;22(18):3779-86.
PMID: 7937092 [PubMed - indexed for MEDLINE]
36: Konstant PH, Pearce LL, Harvey SC. Related Articles, Links
Free in PMC Langevin dynamics of the choline head group in a membrane environment.
Biophys J. 1994 Aug;67(2):713-9.
PMID: 7948684 [PubMed - indexed for MEDLINE]
37: Malhotra A, Harvey SC. Related Articles, Links
Abstract A quantitative model of the Escherichia coli 16 S RNA in the 30 S ribosomal subunit.
J Mol Biol. 1994 Jul 22;240(4):308-40.
PMID: 7518524 [PubMed - indexed for MEDLINE]
38: Malhotra A, Tan RK, Harvey SC. Related Articles, Links
Free in PMC Modeling large RNAs and ribonucleoprotein particles using molecular mechanics techniques.
Biophys J. 1994 Jun;66(6):1777-95.
PMID: 7521223 [PubMed - indexed for MEDLINE]
39: Pearce LL, Harvey SC. Related Articles, Links
Free in PMC Langevin dynamics studies of unsaturated phospholipids in a membrane environment.
Biophys J. 1993 Sep;65(3):1084-92.
PMID: 8241389 [PubMed - indexed for MEDLINE]
40: Harvey SC, Gabb HA. Related Articles, Links
Abstract Conformational transitions using molecular dynamics with minimum biasing.
Biopolymers. 1993 Aug;33(8):1167-72.
PMID: 8364152 [PubMed - indexed for MEDLINE]
41: Harvey SC. Related Articles, Links
Free in PMC Zippier zaps: faster electrostatics calculations.
Biophys J. 1993 Jul;65(1):19-20. No abstract available.
PMID: 8369427 [PubMed - indexed for MEDLINE]
42: Harvey SC, Tan RK. Related Articles, Links
Free in PMC Teaching macromolecular modeling.
Biophys J. 1992 Dec;63(6):1683-8.
PMID: 1489919 [PubMed - indexed for MEDLINE]
43: Hao MH, Harvey SC. Related Articles, Links
Abstract Analyzing the normal mode dynamics of macromolecules by the component synthesis method.
Biopolymers. 1992 Oct;32(10):1393-405.
PMID: 1420966 [PubMed - indexed for MEDLINE]
44: Gabb HA, Harris ME, Pandey NB, Marzluff WF, Harvey SC. Related Articles, Links
Abstract Molecular modeling to predict the structural and biological effects of mutations in a highly conserved histone mRNA loop sequence.
J Biomol Struct Dyn. 1992 Jun;9(6):1119-30.
PMID: 1637506 [PubMed - indexed for MEDLINE]
45: Sprous D, Harvey SC. Related Articles, Links
Free Full Text A three-dimensional model for nodule DNA.
J Biol Chem. 1992 Mar 15;267(8):5502. No abstract available.
PMID: 1544924 [PubMed - indexed for MEDLINE]
46: